If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 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'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ), 'gf_id' => 'HOM05D000690', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000690' ), 'data_identifier' => 'HOM05D000690', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000690', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '828', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p32590' => 'bna', 'A02p01020' => 'bna', 'A02p06440' => 'bna', 'A03p27030' => 'bna', 'A03p42820' => 'bna', 'A04p00160' => 'bna', 'A05p26190' => 'bna', 'A06p15310' => 'bna', 'A06p38570' => 'bna', 'A07p26420' => 'bna', 'A07p29150' => 'bna', 'A07p40580' => 'bna', 'A09p55020' => 'bna', 'A09p55490' => 'bna', 'A10p19340' => 'bna', 'A10p26290' => 'bna', 'Aa31LG10G17040' => 'aar', 'Aa31LG1G13980' => 'aar', 'Aa31LG3G15730' => 'aar', 'Aa31LG4G280' => 'aar', 'Aa31LG4G5150' => 'aar', 'Aa31LG7G3910' => 'aar', 'Aa31LG8G9110' => 'aar', 'Actinidia00779' => 'ach', 'Actinidia02479' => 'ach', 'Actinidia07569' => 'ach', 'Actinidia08485' => 'ach', 'Actinidia13296' => 'ach', 'Actinidia13421' => 'ach', 'Actinidia14646' => 'ach', 'Actinidia15716' => 'ach', 'Actinidia23523' => 'ach', 'Actinidia24907' => 'ach', 'Actinidia30244' => 'ach', 'Actinidia36952' => 'ach', 'Actinidia40138' => 'ach', 'Ah.02g110890' => 'amhyb', 'Ah.10g025470' => 'amhyb', 'Ah.11g050470' => 'amhyb', 'Ah.12g063130' => 'amhyb', 'AL1G31780' => 'aly', 'AL2G34830' => 'aly', 'AL3G36870' => 'aly', 'AL4G17290' => 'aly', 'AL5G46060' => 'aly', 'AL6G22120' => 'aly', 'AL6G32260' => 'aly', 'Aqoxy2G03413' => 'aox', 'Aqoxy5G00446' => 'aox', 'Aqoxy7G01008' => 'aox', 'Aqoxy7G01779' => 'aox', 'Aqoxy7G02612' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10JCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1EUT60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H21PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P95X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ANN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2RLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.908MLV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909U31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIX0E3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC3VUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM1378' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5AP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQ96QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4UMUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L09V3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJE7MY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PACU1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SWQP1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V97YAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WPZ9HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM2HAN' => 'arhy', 'AT1G19200' => 'ath', 'AT1G74940' => 'ath', 'AT1G79970' => 'ath', 'AT2G25690' => 'ath', 'AT3G22550' => 'ath', 'AT3G63210' => 'ath', 'AT5G11460' => 'ath', 'AT5G20700' => 'ath', 'ATR0037G005' => 'atr', 'ATR0626G267' => 'atr', 'ATR0681G345' => 'atr', 'ATR0697G075' => 'atr', 'Atru.chr1.3267' => 'acertr', 'Atru.chr4.2444' => 'acertr', 'Atru.chr5.1472' => 'acertr', 'Atru.chr7.1742' => 'acertr', 'Atru.chr7.2309' => 'acertr', 'Atru.chr7.957' => 'acertr', 'AUR62024826' => 'cqu', 'AUR62025286' => 'cqu', 'AUR62028292' => 'cqu', 'AUR62032389' => 'cqu', 'BcaB01g03009' => 'bca', 'BcaB02g06974' => 'bca', 'BcaB02g08075' => 'bca', 'BcaB04g20513' => 'bca', 'BcaB05g22818' => 'bca', 'BcaB06g26369' => 'bca', 'BcaB07g31930' => 'bca', 'BcaB08g35212' => 'bca', 'BcaB08g36520' => 'bca', 'BcaB08g37057' => 'bca', 'BcaC01g03437' => 'bca', 'BcaC02g10345' => 'bca', 'BcaC03g13791' => 'bca', 'BcaC04g19224' => 'bca', 'BcaC04g19460' => 'bca', 'BcaC04g23751' => 'bca', 'BcaC05g25813' => 'bca', 'BcaC05g28036' => 'bca', 'BcaC06g30716' => 'bca', 'BcaC07g40801' => 'bca', 'BcaC07g40849' => 'bca', 'BcaC08g45281' => 'bca', 'BcaC08g46927' => 'bca', 'BcaC08g46962' => 'bca', 'BcaC09g49180' => 'bca', 'BcaNung06477' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01380' => 'bna', 'BolC1t04130H' => 'bol', 'BolC2t07062H' => 'bol', 'BolC3t15585H' => 'bol', 'BolC3t17529H' => 'bol', 'BolC4t24531H' => 'bol', 'BolC5t30459H' => 'bol', 'BolC5t32795H' => 'bol', 'BolC6t38051H' => 'bol', 'BolC6t38420H' => 'bol', 'BolC6t39932H' => 'bol', 'BolC7t44492H' => 'bol', 'BolC8t51370H' => 'bol', 'BolC8t51419H' => 'bol', 'BolC9t58417H' => 'bol', 'BolC9t59365H' => 'bol', 'BraA01t03387Z' => 'bra', 'BraA02t05083Z' => 'bra', 'BraA02t05589Z' => 'bra', 'BraA03t11914Z' => 'bra', 'BraA03t13429Z' => 'bra', 'BraA04t15738Z' => 'bra', 'BraA05t21494Z' => 'bra', 'BraA06t24644Z' => 'bra', 'BraA06t26772Z' => 'bra', 'BraA07t30286Z' => 'bra', 'BraA07t30554Z' => 'bra', 'BraA07t31602Z' => 'bra', 'BraA09t40911Z' => 'bra', 'BraA09t40951Z' => 'bra', 'BraA10t44010Z' => 'bra', 'BraA10t44685Z' => 'bra', 'C01p41740' => 'bna', 'C03p32440' => 'bna', 'C03p33170' => 'bna', 'C03p52610' => 'bna', 'C04p29980' => 'bna', 'C05p17540' => 'bna', 'C05p40540' => 'bna', 'C06p28810' => 'bna', 'C06p33030' => 'bna', 'C06p48950' => 'bna', 'C07p39680' => 'bna', 'C08p37920' => 'bna', 'C08p38470' => 'bna', 'C09p55530' => 'bna', 'C09p65400' => 'bna', 'CAN.G1058.45' => 'can', 'CAN.G1094.12' => 'can', 'CAN.G1875.1' => 'can', 'CAN.G421.8' => 'can', 'CAN.G679.1' => 'can', 'CAN.G8.45' => 'can', 'CANSAT25G1016' => 'cansat', 'CANSAT25G3893' => 'cansat', 'CANSAT56G1458' => 'cansat', 'CANSAT56G1930' => 'cansat', 'CANSAT78G0588' => 'cansat', 'CANSAT80G0586' => 'cansat', 'CARHR019800' => 'chi', 'CARHR068260' => 'chi', 'CARHR074510' => 'chi', 'CARHR098440' => 'chi', 'CARHR115560' => 'chi', 'CARHR192110' => 'chi', 'CARHR201770' => 'chi', 'CARHR291730' => 'chi', 'Carub.0002s2173' => 'cru', 'Carub.0003s2271' => 'cru', 'Carub.0004s0548' => 'cru', 'Carub.0005s2990' => 'cru', 'Carub.0006s0991' => 'cru', 'Carub.0006s1904' => 'cru', 'Ca_01112_v3' => 'car', 'Ca_02228_v3' => 'car', 'Ca_09314_v3' => 'car', 'Ca_09743_v3' => 'car', 'Ca_10870_v3' => 'car', 'Ca_12900_v3' => 'car', 'Ca_15689_v3' => 'car', 'Cc00_g00160' => 'ccan', 'Cc00_g22710' => 'ccan', 'Cc01_g19280' => 'ccan', 'Cc03_g03960' => 'ccan', 'Cc04_g03470' => 'ccan', 'Cc08_g08170' => 'ccan', 'CDE02G0199' => 'cde', 'CDE04G3696' => 'cde', 'CDE05G0061' => 'cde', 'CDE05G1121' => 'cde', 'CDE05G1367' => 'cde', 'CDE06G0781' => 'cde', 'CDE07G1467' => 'cde', 'CDE07G1620' => 'cde', 'Cfa002062' => 'cfa', 'Cfa002961' => 'cfa', 'Cfa006164' => 'cfa', 'Cfa009294' => 'cfa', 'Cfa010120' => 'cfa', 'Cfa011182' => 'cfa', 'Cfa020749' => 'cfa', 'Ciclev10005538m.g' => 'ccl', 'Ciclev10008522m.g' => 'ccl', 'Ciclev10009331m.g' => 'ccl', 'Ciclev10009353m.g' => 'ccl', 'Ciclev10021541m.g' => 'ccl', 'Ciclev10025884m.g' => 'ccl', 'CiPaw.01G167900' => 'cil', 'CiPaw.01G239600' => 'cil', 'CiPaw.02G098500' => 'cil', 'CiPaw.02G151300' => 'cil', 'CiPaw.03G203200' => 'cil', 'CiPaw.04G141100' => 'cil', 'CiPaw.07G089900' => 'cil', 'CiPaw.08G107400' => 'cil', 'CiPaw.15G156500' => 'cil', 'CiPaw.16G103700' => 'cil', 'ClCG03G014840' => 'cla', 'ClCG05G017290' => 'cla', 'ClCG06G006300' => 'cla', 'ClCG07G013020' => 'cla', 'ClCG08G012840' => 'cla', 'ClCG09G007210' => 'cla', 'ClCG11G011410' => 'cla', 'COL.COLO4_09065' => 'col', 'COL.COLO4_18062' => 'col', 'COL.COLO4_21495' => 'col', 'COL.COLO4_30363' => 'col', 'Cpa.g.sc1188.2' => 'cpa', 'Cpa.g.sc205.33' => 'cpa', 'Cpa.g.sc28.8' => 'cpa', 'Cpa.g.sc487.5' => 'cpa', 'CsaV3_1G041300' => 'csa', 'CsaV3_2G009080' => 'csa', 'CsaV3_2G031580' => 'csa', 'CsaV3_3G025160' => 'csa', 'CsaV3_3G026200' => 'csa', 'CsaV3_3G026210' => 'csa', 'CsaV3_3G046800' => 'csa', 'CsaV3_7G022420' => 'csa', 'CsaV3_7G027960' => 'csa', 'CSS0007190' => 'camsi', 'CSS0008993' => 'camsi', 'CSS0013212' => 'camsi', 'CSS0017182' => 'camsi', 'CSS0019997' => 'camsi', 'CSS0022393' => 'camsi', 'CSS0030583' => 'camsi', 'CSS0032732' => 'camsi', 'CSS0033904' => 'camsi', 'CSS0038232' => 'camsi', 'CSS0043191' => 'camsi', 'CSS0044750' => 'camsi', 'CSS0046742' => 'camsi', 'CSS0047845' => 'camsi', 'CSS0048741' => 'camsi', 'DCAR_002382' => 'dca', 'DCAR_002721' => 'dca', 'DCAR_009045' => 'dca', 'DCAR_018430' => 'dca', 'DCAR_020463' => 'dca', 'DCAR_024769' => 'dca', 'DCAR_030647' => 'dca', 'Dinv12609' => 'din', 'Dinv14007' => 'din', 'Dinv25533' => 'din', 'Dinv30234' => 'din', 'Dinv32913' => 'din', 'Dinv34774' => 'din', 'Dinv35870' => 'din', 'Dinv38050' => 'din', 'Dinv44548' => 'din', 'Duzib052G0974' => 'dzi', 'Duzib133G1531' => 'dzi', 'Duzib138G1276' => 'dzi', 'Duzib150G1085' => 'dzi', 'Duzib151G0670' => 'dzi', 'Duzib160G0184' => 'dzi', 'Duzib168G1432' => 'dzi', 'Duzib187G0020' => 'dzi', 'Duzib192G0028' => 'dzi', 'Duzib211G0670' => 'dzi', 'Duzib212G0188' => 'dzi', 'Duzib235G0332' => 'dzi', 'ECA234G4314' => 'eca', 'ECA236G3775' => 'eca', 'ECA236G3924' => 'eca', 'ECA246G2712' => 'eca', 'ECA247G1227' => 'eca', 'ECA248G0325' => 'eca', 'EL10Ac2g02529' => 'bvu', 'EL10Ac5g10542' => 'bvu', 'EL10Ac8g18999' => 'bvu', 'Eucgr.B01058' => 'egr', 'Eucgr.C00783' => 'egr', 'Eucgr.C01570' => 'egr', 'Eucgr.C02876' => 'egr', 'Eucgr.C03298' => 'egr', 'Eucgr.H03450' => 'egr', 'Eucgr.H03950' => 'egr', 'Eucgr.K03370' => 'egr', 'Eucgr.L00403' => 'egr', 'FAN02G2019' => 'fan', 'FAN05G2745' => 'fan', 'FAN07G2002' => 'fan', 'FAN07G2425' => 'fan', 'FAN09G4176' => 'fan', 'FAN12G4257' => 'fan', 'FAN14G4855' => 'fan', 'FAN15G1898' => 'fan', 'FAN15G2082' => 'fan', 'FAN17G0131' => 'fan', 'FAN17G1426' => 'fan', 'FAN19G2614' => 'fan', 'FAN20G1467' => 'fan', 'FAN20G1973' => 'fan', 'FAN22G0604' => 'fan', 'FAN22G1409' => 'fan', 'FAN23G0675' => 'fan', 'FAN24G1171' => 'fan', 'FAN24G1198' => 'fan', 'FAN26G0308' => 'fan', 'FAN26G2648' => 'fan', 'FAN27G0350' => 'fan', 'FAN27G2681' => 'fan', 'FAN28G2744' => 'fan', 'FAN28G2832' => 'fan', 'FvH4_1g09090' => 'fve', 'FvH4_2g23270' => 'fve', 'FvH4_2g30270' => 'fve', 'FvH4_4g06100' => 'fve', 'FvH4_4g16170' => 'fve', 'FvH4_6g31090' => 'fve', 'Glyma.01G002000' => 'gma', 'Glyma.01G236800' => 'gma', 'Glyma.02G146100' => 'gma', 'Glyma.03G155800' => 'gma', 'Glyma.04G073200' => 'gma', 'Glyma.06G074400' => 'gma', 'Glyma.09G071800' => 'gma', 'Glyma.10G027900' => 'gma', 'Glyma.10G247000' => 'gma', 'Glyma.11G006400' => 'gma', 'Glyma.13G112200' => 'gma', 'Glyma.13G359900' => 'gma', 'Glyma.14G130800' => 'gma', 'Glyma.15G014100' => 'gma', 'Glyma.15G179800' => 'gma', 'Glyma.17G047500' => 'gma', 'Glyma.17G202600' => 'gma', 'Glyma.19G158100' => 'gma', 'Glyma.20G146900' => 'gma', 'Gohir.A03G021300' => 'ghi', 'Gohir.A05G129900' => 'ghi', 'Gohir.A06G078600' => 'ghi', 'Gohir.A07G016100' => 'ghi', 'Gohir.A08G065400' => 'ghi', 'Gohir.A09G083100' => 'ghi', 'Gohir.A09G216800' => 'ghi', 'Gohir.A11G124200' => 'ghi', 'Gohir.A12G004400' => 'ghi', 'Gohir.D03G147500' => 'ghi', 'Gohir.D05G129100' => 'ghi', 'Gohir.D06G077700' => 'ghi', 'Gohir.D07G015800' => 'ghi', 'Gohir.D08G073900' => 'ghi', 'Gohir.D09G083100' => 'ghi', 'Gohir.D09G219200' => 'ghi', 'Gohir.D11G129400' => 'ghi', 'Gohir.D12G004100' => 'ghi', 'Gorai.001G016700' => 'gra', 'Gorai.003G155000' => 'gra', 'Gorai.004G078300' => 'gra', 'Gorai.006G098700' => 'gra', 'Gorai.006G240200' => 'gra', 'Gorai.007G138400' => 'gra', 'Gorai.008G003900' => 'gra', 'Gorai.009G133200' => 'gra', 'Gorai.010G090800' => 'gra', 'Gorai.012G060900' => 'gra', 'GSVIVG01001173001' => 'vvi', 'GSVIVG01015039001' => 'vvi', 'GSVIVG01032258001' => 'vvi', 'GSVIVG01035745001' => 'vvi', 'HanXRQChr04g0118981' => 'han', 'HanXRQChr04g0125881' => 'han', 'HanXRQChr10g0282391' => 'han', 'HanXRQChr10g0309571' => 'han', 'HanXRQChr12g0354461' => 'han', 'HanXRQChr12g0359181' => 'han', 'HanXRQChr13g0407221' => 'han', 'HanXRQChr14g0446921' => 'han', 'HanXRQChr15g0466831' => 'han', 'HanXRQChr17g0539521' => 'han', 'Haze_00880' => 'cav', 'Haze_04686' => 'cav', 'Haze_16433' => 'cav', 'Haze_19104' => 'cav', 'Haze_26041' => 'cav', 'Hma1.2p1_0003F.1_g003520' => 'hma', 'Hma1.2p1_0140F.1_g063830' => 'hma', 'Hma1.2p1_0171F.1_g075660' => 'hma', 'Hma1.2p1_0263F.1_g105470' => 'hma', 'Hma1.2p1_0314F.1_g122000' => 'hma', 'Hma1.2p1_0667F.1_g199720' => 'hma', 'Hma1.2p1_0745F.1_g212190' => 'hma', 'Hma1.2p1_0822F.1_g224320' => 'hma', 'Hma1.2p1_1572F.1_g291335' => 'hma', 'HPP92_000975' => 'vpl', 'HPP92_001004' => 'vpl', 'HPP92_005175' => 'vpl', 'HPP92_006118' => 'vpl', 'HPP92_010416' => 'vpl', 'HPP92_010800' => 'vpl', 'HPP92_011065' => 'vpl', 'HPP92_013276' => 'vpl', 'HPP92_016594' => 'vpl', 'HPP92_017377' => 'vpl', 'HPP92_020046' => 'vpl', 'HPP92_024359' => 'vpl', 'Hund02827' => 'sun', 'Hund02999' => 'sun', 'Hund08838' => 'sun', 'Hund09504' => 'sun', 'Hund25653' => 'sun', 'Hund26063' => 'sun', 'Hund27938' => 'sun', 'Lalb_Chr06g0162881' => 'lal', 'Lalb_Chr08g0232731' => 'lal', 'Lalb_Chr08g0243731' => 'lal', 'Lalb_Chr11g0064011' => 'lal', 'Lalb_Chr11g0074111' => 'lal', 'Lalb_Chr11g0074121' => 'lal', 'Lalb_Chr12g0200281' => 'lal', 'Lalb_Chr21g0306391' => 'lal', 'Lalb_Chr22g0351241' => 'lal', 'Lalb_Chr23g0268951' => 'lal', 'Lalb_Chr23g0276311' => 'lal', 'Lalb_Chr24g0395831' => 'lal', 'Lalb_Chr24g0402351' => 'lal', 'Lj1g0005908' => 'lja', 'Lj1g0020397' => 'lja', 'Lj3g0007649' => 'lja', 'Lj4A916T19' => 'lonja', 'Lj4g0003690' => 'lja', 'Lj5A749T42' => 'lonja', 'Lj5A765T48' => 'lonja', 'Lj5g0006667' => 'lja', 'Lj5g0018128' => 'lja', 'Lj5g0026187' => 'lja', 'Lj6g0020365' => 'lja', 'Lj6P606T23' => 'lonja', 'Lj7A689T79' => 'lonja', 'Lj7C710T6' => 'lonja', 'Lju41C26G6' => 'lonja', 'Lsat_1_v5_gn_1_38341' => 'lsa', 'Lsat_1_v5_gn_3_27741' => 'lsa', 'Lsat_1_v5_gn_4_103860' => 'lsa', 'Lsat_1_v5_gn_5_139480' => 'lsa', 'Lsat_1_v5_gn_5_184280' => 'lsa', 'Lsat_1_v5_gn_5_81400' => 'lsa', 'Lsat_1_v5_gn_8_56701' => 'lsa', 'Lsat_1_v5_gn_8_85861' => 'lsa', 'Lsat_1_v5_gn_9_6360' => 'lsa', 'Manes.01G206000' => 'mes', 'Manes.03G042600' => 'mes', 'Manes.03G176900' => 'mes', 'Manes.04G123100' => 'mes', 'Manes.05G079800' => 'mes', 'Manes.11G047700' => 'mes', 'Manes.15G030100' => 'mes', 'Manes.16G069100' => 'mes', 'Manes.16G093000' => 'mes', 'MBI01_g34895_MAGBIO' => 'mbi', 'MBI05_g05245_MAGBIO' => 'mbi', 'MBI13_g00688_MAGBIO' => 'mbi', 'MBI16_g00846_MAGBIO' => 'mbi', 'MBI19_g29875_MAGBIO' => 'mbi', 'MD02G1096300' => 'mdo', 'MD03G1262000' => 'mdo', 'MD08G1134900' => 'mdo', 'MD11G1282700' => 'mdo', 'MD13G1195400' => 'mdo', 'MD13G1233400' => 'mdo', 'MD15G1113700' => 'mdo', 'MD15G1220800' => 'mdo', 'MD16G1196000' => 'mdo', 'MD16G1238400' => 'mdo', 'Medtr1g010140' => 'mtr', 'Medtr1g071780' => 'mtr', 'Medtr1g103500' => 'mtr', 'Medtr1g103510' => 'mtr', 'Medtr2g042970' => 'mtr', 'Medtr2g102237' => 'mtr', 'Medtr3g108290' => 'mtr', 'Medtr4g120160' => 'mtr', 'Medtr4g124930' => 'mtr', 'Medtr7g095170' => 'mtr', 'MELO3C003658.2' => 'cme', 'MELO3C003931.2' => 'cme', 'MELO3C011209.2' => 'cme', 'MELO3C012660.2' => 'cme', 'MELO3C012956.2' => 'cme', 'MELO3C015541.2' => 'cme', 'MELO3C027406.2' => 'cme', 'Migut.A00260' => 'egut', 'Migut.D00319' => 'egut', 'Migut.G00350' => 'egut', 'Migut.J00837' => 'egut', 'Migut.J00904' => 'egut', 'Migut.L01583' => 'egut', 'MSTRG.11726' => 'ama', 'MSTRG.17455' => 'ama', 'MSTRG.18247' => 'ama', 'MSTRG.19442' => 'ama', 'MSTRG.21547' => 'ama', 'MSTRG.21863' => 'ama', 'MSTRG.25885' => 'ama', 'MSTRG.26484' => 'ama', 'MSTRG.4042' => 'ama', 'Nitab4.5_0000024g0310' => 'nta', 'Nitab4.5_0000219g0120' => 'nta', 'Nitab4.5_0000250g0040' => 'nta', 'Nitab4.5_0000252g0040' => 'nta', 'Nitab4.5_0000513g0130' => 'nta', 'Nitab4.5_0000853g0020' => 'nta', 'Nitab4.5_0001535g0010' => 'nta', 'Nitab4.5_0001565g0010' => 'nta', 'Nitab4.5_0002070g0020' => 'nta', 'Nitab4.5_0002470g0040' => 'nta', 'Nitab4.5_0003320g0010' => 'nta', 'Nitab4.5_0004141g0060' => 'nta', 'Nitab4.5_0005753g0020' => 'nta', 'Nitab4.5_0006971g0010' => 'nta', 'Nitab4.5_0007258g0030' => 'nta', 'Nitab4.5_0009109g0030' => 'nta', 'Nitab4.5_0012177g0010' => 'nta', 'Nn1g02358' => 'nnu', 'Nn1g06216' => 'nnu', 'Nn2g11789' => 'nnu', 'Nn3g18830' => 'nnu', 'Nn6g34094' => 'nnu', 'Nn6g35673' => 'nnu', 'Nn8g38579' => 'nnu', 'Nn8g39227' => 'nnu', 'Oeu005157.1' => 'oeu', 'Oeu019406.1' => 'oeu', 'Oeu025292.1' => 'oeu', 'Oeu025381.1' => 'oeu', 'Oeu025740.1' => 'oeu', 'Oeu028824.2' => 'oeu', 'Oeu031566.1' => 'oeu', 'Oeu033991.1' => 'oeu', 'Oeu040655.1' => 'oeu', 'Oeu041700.1' => 'oeu', 'Oeu060634.2' => 'oeu', 'Os01g0180400' => 'osa', 'Os01g0593200' => 'osa', 'Os01g0719000' => 'osa', 'Os02g0174800' => 'osa', 'Os03g0183500' => 'osa', 'Os03g0665200' => 'osa', 'Os05g0180500' => 'osa', 'Os07g0175300' => 'osa', 'Os07g0615500' => 'osa', 'Os10g0422600' => 'osa', 'Os11g0659200' => 'osa', 'Peaxi162Scf00006g03310' => 'pax', 'Peaxi162Scf00092g00515' => 'pax', 'Peaxi162Scf00105g01113' => 'pax', 'Peaxi162Scf00161g00099' => 'pax', 'Peaxi162Scf00320g00121' => 'pax', 'Peaxi162Scf00418g00036' => 'pax', 'Peaxi162Scf00533g00815' => 'pax', 'Peaxi162Scf01248g00004' => 'pax', 'PGR004G1117' => 'pgr', 'PGR031G1967' => 'pgr', 'PGR044G0133' => 'pgr', 'PGR044G0450' => 'pgr', 'PGR044G2518' => 'pgr', 'PGR102G1269' => 'pgr', 'PGR102G1975' => 'pgr', 'PGR142G1551' => 'pgr', 'PGSC0003DMG400009560' => 'stu', 'PGSC0003DMG400014504' => 'stu', 'PGSC0003DMG400014642' => 'stu', 'PGSC0003DMG400020401' => 'stu', 'PGSC0003DMG400025721' => 'stu', 'PGSC0003DMG400032251' => 'stu', 'Phvul.001G056900' => 'pvu', 'Phvul.001G153200' => 'pvu', 'Phvul.002G044300' => 'pvu', 'Phvul.003G129000' => 'pvu', 'Phvul.004G177700' => 'pvu', 'Phvul.005G171700' => 'pvu', 'Phvul.007G058400' => 'pvu', 'Phvul.007G173400' => 'pvu', 'Phvul.009G099100' => 'pvu', 'Phvul.009G225200' => 'pvu', 'Potri.001G179700' => 'ptr', 'Potri.002G050800' => 'ptr', 'Potri.005G211500' => 'ptr', 'Potri.006G078300' => 'ptr', 'Potri.006G139200' => 'ptr', 'Potri.006G245200' => 'ptr', 'Potri.008G154600' => 'ptr', 'Potri.010G085700' => 'ptr', 'Potri.018G035400' => 'ptr', 'Potri.018G146800' => 'ptr', 'Prupe.1G016000' => 'ppe', 'Prupe.1G064600' => 'ppe', 'Prupe.1G464800' => 'ppe', 'Prupe.3G071600' => 'ppe', 'Prupe.7G194600' => 'ppe', 'Prupe.8G238300' => 'ppe', 'Psat0s2945g0080' => 'psa', 'Psat0s3238g0040' => 'psa', 'Psat3g063120' => 'psa', 'Psat4g018960' => 'psa', 'Psat5g299120' => 'psa', 'Psat6g031480' => 'psa', 'Psat6g059800' => 'psa', 'Psat6g206320' => 'psa', 'PSO063G2866' => 'pso', 'PSO104G0175' => 'pso', 'PSO210G5633' => 'pso', 'PSO210G6390' => 'pso', 'PSO386G0242' => 'pso', 'PSO421G0213' => 'pso', 'PSO421G0334' => 'pso', 'PSO724G1067' => 'pso', 'PSO761G0687' => 'pso', 'PSO782G0770' => 'pso', 'PSO832G3095' => 'pso', 'QL05p024282' => 'qlo', 'QL06p002007' => 'qlo', 'QL11p001312' => 'qlo', 'QL11p008788' => 'qlo', 'QL12p021077' => 'qlo', 'RcHm_v2.0_Chr2g0095501' => 'rch', 'RcHm_v2.0_Chr2g0137791' => 'rch', 'RcHm_v2.0_Chr4g0397681' => 'rch', 'RcHm_v2.0_Chr4g0415801' => 'rch', 'RcHm_v2.0_Chr6g0290641' => 'rch', 'RcHm_v2.0_Chr6g0312601' => 'rch', 'Rhsim01G0110200' => 'rsi', 'Rhsim01G0273400' => 'rsi', 'Rhsim02G0026200' => 'rsi', 'Rhsim03G0226500' => 'rsi', 'Rhsim04G0201300' => 'rsi', 'Rhsim05G0004600' => 'rsi', 'Sabra01G0147100' => 'sbr', 'Sabra02G0041500' => 'sbr', 'Sabra05G0161600' => 'sbr', 'Sabra06G0059200' => 'sbr', 'Sabra06G0108800' => 'sbr', 'Sabra06G0192000' => 'sbr', 'Sabra08G0117900' => 'sbr', 'Sabra10G0057900' => 'sbr', 'Sabra18G0036000' => 'sbr', 'Sabra18G0121100' => 'sbr', 'Sabra18G0128200' => 'sbr', 'SalBow3G1058' => 'sbo', 'SalBow3G1831' => 'sbo', 'SalBow4G1715' => 'sbo', 'SalBow4G2789' => 'sbo', 'SalBow6G0007' => 'sbo', 'SalBow6G0182' => 'sbo', 'SalBow6G2022' => 'sbo', 'Sc08g0009030' => 'sci', 'Sc09g0008900' => 'sci', 'Sc12g0009190' => 'sci', 'Sc17g0001340' => 'sci', 'Sc25g0004330' => 'sci', 'Sed0004018' => 'sed', 'Sed0004619' => 'sed', 'Sed0005162' => 'sed', 'Sed0007047' => 'sed', 'Sed0007683' => 'sed', 'Sed0009416' => 'sed', 'Sed0010448' => 'sed', 'Sed0013688' => 'sed', 'Sed0015173' => 'sed', 'Sed0026167' => 'sed', 'SEGI_01520' => 'sgi', 'SEGI_14383' => 'sgi', 'SGA_v2.0_scaffold138G35321' => 'sas', 'SGA_v2.0_scaffold1G00499' => 'sas', 'SGA_v2.0_scaffold21G09531' => 'sas', 'SGA_v2.0_scaffold297G47587' => 'sas', 'SHI17301' => 'shi', 'SHI17302' => 'shi', 'SHI18644' => 'shi', 'SHI20510' => 'shi', 'SHI22006' => 'shi', 'SHI34638' => 'shi', 'SHI37618' => 'shi', 'SHI38089' => 'shi', 'Solyc06g009000.1' => 'sly', 'Solyc07g017220.3' => 'sly', 'Solyc07g042190.3' => 'sly', 'Solyc08g067970.3' => 'sly', 'Solyc09g065390.1' => 'sly', 'Solyc09g082210.4' => 'sly', 'Solyc12g017850.2' => 'sly', 'Sopen00g005940' => 'spe', 'Sopen07g021800' => 'spe', 'Sopen08g021890' => 'spe', 'Sopen09g027160' => 'spe', 'Sopen09g031090' => 'spe', 'Sopen12g008660' => 'spe', 'Sp1g17100' => 'spa', 'Sp3g20330' => 'spa', 'Sp4g05300' => 'spa', 'Sp5g00320' => 'spa', 'Sp5g30080' => 'spa', 'Sp5g35750' => 'spa', 'Sp6g23780' => 'spa', 'Sp6g32140' => 'spa', 'TAR362G0245' => 'tar', 'TAR365G1196' => 'tar', 'TAR369G0699' => 'tar', 'TAR383G0298' => 'tar', 'TAR383G0716' => 'tar', 'TAR383G0827' => 'tar', 'TAR468G0001' => 'tar', 'TAR624G0399' => 'tar', 'TAR624G0598' => 'tar', 'TAR626G1114' => 'tar', 'TAR633G0554' => 'tar', 'TAR636G0174' => 'tar', 'TAR636G0928' => 'tar', 'THA.LOC104799214' => 'tha', 'THA.LOC104799612' => 'tha', 'THA.LOC104800434' => 'tha', 'THA.LOC104803039' => 'tha', 'THA.LOC104803775' => 'tha', 'THA.LOC104803816' => 'tha', 'THA.LOC104810989' => 'tha', 'THA.LOC104815048' => 'tha', 'THA.LOC104817557' => 'tha', 'THA.LOC104822263' => 'tha', 'THA.LOC104823044' => 'tha', 'THA.LOC104827335' => 'tha', 'Thecc.01G275400' => 'tca', 'Thecc.04G234200' => 'tca', 'Thecc.06G086500' => 'tca', 'Thecc.09G073100' => 'tca', 'Thecc.09G195800' => 'tca', 'Thhalv10000253m.g' => 'esa', 'Thhalv10005101m.g' => 'esa', 'Thhalv10006167m.g' => 'esa', 'Thhalv10008681m.g' => 'esa', 'Thhalv10014059m.g' => 'esa', 'Thhalv10014483m.g' => 'esa', 'Thhalv10019122m.g' => 'esa', 'Thhalv10019688m.g' => 'esa', 'Thhalv10021330m.g' => 'esa', 'TPR.G12465' => 'tpr', 'TPR.G12617' => 'tpr', 'TPR.G24310' => 'tpr', 'TPR.G26530' => 'tpr', 'TPR.G27139' => 'tpr', 'TPR.G37190' => 'tpr', 'TPR.G5541' => 'tpr', 'TWI09G0820' => 'twi', 'TWI18G0366' => 'twi', 'TWI32G0163' => 'twi', 'TWI34G1037' => 'twi', 'TWI34G1591' => 'twi', 'TWI53G1639' => 'twi', 'TWI53G1772' => 'twi', 'TWI63G0686' => 'twi', 'TWI63G1636' => 'twi', 'TWI73G0337' => 'twi', 'TWI75G0080' => 'twi', 'unitig_0.g130' => 'ugi', 'unitig_22.g5265' => 'ugi', 'unitig_32.g10923' => 'ugi', 'unitig_578.g15827' => 'ugi', 'unitig_748.g8214' => 'ugi', 'unitig_749.g14243' => 'ugi', 'unitig_8.g3723' => 'ugi', 'vmacro05349' => 'vma', 'vmacro05465' => 'vma', 'vmacro06352' => 'vma', 'vmacro15352' => 'vma', 'vmacro17108' => 'vma', 'vmacro22699' => 'vma', 'VMungo0720G1550' => 'vmu', 'VMungo0720G1755' => 'vmu', 'VMungo1080G0362' => 'vmu', 'VMungo1215G1183' => 'vmu', 'VMungo1215G1688' => 'vmu', 'VMungo1309G1386' => 'vmu', 'VMungo1309G2086' => 'vmu', 'Zm00001eb019460' => 'zma', 'Zm00001eb047870' => 'zma', 'Zm00001eb122190' => 'zma', 'Zm00001eb154570' => 'zma', 'Zm00001eb161050' => 'zma', 'Zm00001eb165470' => 'zma', 'Zm00001eb217860' => 'zma', 'Zm00001eb233410' => 'zma', 'Zm00001eb283770' => 'zma', 'Zm00001eb301100' => 'zma', 'Zm00001eb337180' => 'zma' ) $gf_id = 'HOM05D000690' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000690' ) $data_identifier = 'HOM05D000690' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 4, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 12, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 6, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 13, 'tha' => (int) 12, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337180' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1